Package: CFAcoop
Type: Package
Title: Colony Formation Assay: Taking into Account Cellular Cooperation
Version: 1.0.0
Authors@R: c(
    person("Daniel", "Samaga", 
           email = "daniel.samaga@helmholtz-muenchen.de",
           role = c("cre","aut")),
    person("Nikko", "Brix", 
           role = "aut"),
    person("Kirsten", "Lauber", 
           role = "aut"),
    person("Horst", "Zitzelsberger", 
           role = "aut"))
Maintainer: Daniel Samaga <daniel.samaga@helmholtz-muenchen.de>
Depends: R (>= 3.5.0)
URL: https://github.com/ZytoHMGU/CFAcoop
BugReports: https://github.com/ZytoHMGU/CFAcoop/issues
Description: Cellular cooperation compromises the plating
        efficiency-based analysis of clonogenic survival data. This
        tool provides functions that enable a robust analysis of colony
        formation assay (CFA) data in presence or absence of cellular
        cooperation. The implemented method has been described in Brix
        et al. (2020). (Brix, N., Samaga, D., Hennel, R. et al. "The
        clonogenic assay: robustness of plating efficiency-based
        analysis is strongly compromised by cellular cooperation."
        Radiat Oncol 15, 248 (2020). <doi:10.1186/s13014-020-01697-y>)
        Power regression for parameter estimation, calculation of
        survival fractions, uncertainty analysis and plotting functions
        are provided.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: Hmisc
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://zytohmgu.r-universe.dev
Date/Publication: 2021-06-11 08:20:35 UTC
RemoteUrl: https://github.com/zytohmgu/cfacoop
RemoteRef: HEAD
RemoteSha: 39bb6d02387d0f00f2cad4f03e38901c078d4cc4
NeedsCompilation: no
Packaged: 2026-10-01 08:54:57 UTC; root
Author: Daniel Samaga [cre, aut],
  Nikko Brix [aut],
  Kirsten Lauber [aut],
  Horst Zitzelsberger [aut]