Package: LDAcoop 0.1.2

Daniel Samaga

LDAcoop: Analysis of Data from Limiting Dilution Assay (LDA) with or without Cellular Cooperation

Cellular cooperation compromises the established method of calculating clonogenic activity from limiting dilution assay (LDA) data. This tool provides functions that enable robust analysis in presence or absence of cellular cooperation. The implemented method incorporates the same cooperativity module to model the non-linearity associated with cellular cooperation as known from the colony formation assay (Brix et al. (2021) <doi:10.1038/s41596-021-00615-0>: "Analysis of clonogenic growth in vitro." Nature protocols).

Authors:Daniel Samaga [cre, aut], Nikko Brix [aut], Benedek Danko [aut], Kirsten Lauber [aut], Horst Zitzelsberger [aut]

LDAcoop_0.1.2.tar.gz
LDAcoop_0.1.2.zip(r-4.5)LDAcoop_0.1.2.zip(r-4.4)LDAcoop_0.1.2.zip(r-4.3)
LDAcoop_0.1.2.tgz(r-4.5-any)LDAcoop_0.1.2.tgz(r-4.4-any)LDAcoop_0.1.2.tgz(r-4.3-any)
LDAcoop_0.1.2.tar.gz(r-4.5-noble)LDAcoop_0.1.2.tar.gz(r-4.4-noble)
LDAcoop_0.1.2.tgz(r-4.4-emscripten)LDAcoop_0.1.2.tgz(r-4.3-emscripten)
LDAcoop.pdf |LDAcoop.html✨
LDAcoop/json (API)

# Install 'LDAcoop' in R:
install.packages('LDAcoop', repos = c('https://zytohmgu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zytohmgu/ldacoop/issues

Datasets:
  • LDAdata - LDA (limiting dilution assay) data from a set of cell lines

On CRAN:

Conda:

4.40 score 3 scripts 171 downloads 9 exports 65 dependencies

Last updated 9 months agofrom:40241733f6. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 14 2025
R-4.5-winOKMar 14 2025
R-4.5-macOKMar 14 2025
R-4.5-linuxOKMar 14 2025
R-4.4-winOKMar 14 2025
R-4.4-macOKMar 14 2025
R-4.4-linuxOKMar 14 2025
R-4.3-winOKMar 14 2025
R-4.3-macOKMar 14 2025

Exports:LDA_activityLDA_activity_singleLDA_plotLDA_plot_activityLDA_plot_SFLDA_prepare_plotLDA_survivalLDA_survival_singleLDA_table

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacedata.tabledigestevaluatefansifarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmennetpillarpkgconfigR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapisassscalesstringistringrtibbletinytexutf8vctrsviridisviridisLitewithrxfunyaml

LDAcoop

Rendered fromLDAcoop.Rmdusingknitr::rmarkdownon Mar 14 2025.

Last update: 2024-03-04
Started: 2022-06-29

Readme and manuals

Help Manual

Help pageTopics
LDA_activityLDA_activity
LDA_activity_singleLDA_activity_single
LDA_plotLDA_plot
LDA_plot_activityLDA_plot_activity
LDA_plot_SFLDA_plot_SF
LDA_prepare_plotLDA_prepare_plot
LDA_survivalLDA_survival
LDA_survival_singleLDA_survival_single
LDA_tableLDA_table
LDA (limiting dilution assay) data from a set of cell linesLDAdata