Package: LDAcoop 0.1.2

Daniel Samaga

LDAcoop: Analysis of Data from Limiting Dilution Assay (LDA) with or without Cellular Cooperation

Cellular cooperation compromises the established method of calculating clonogenic activity from limiting dilution assay (LDA) data. This tool provides functions that enable robust analysis in presence or absence of cellular cooperation. The implemented method incorporates the same cooperativity module to model the non-linearity associated with cellular cooperation as known from the colony formation assay (Brix et al. (2021) <doi:10.1038/s41596-021-00615-0>: "Analysis of clonogenic growth in vitro." Nature protocols).

Authors:Daniel Samaga [cre, aut], Nikko Brix [aut], Benedek Danko [aut], Kirsten Lauber [aut], Horst Zitzelsberger [aut]

LDAcoop_0.1.2.tar.gz
LDAcoop_0.1.2.zip(r-4.7)LDAcoop_0.1.2.zip(r-4.6)LDAcoop_0.1.2.zip(r-4.5)
LDAcoop_0.1.2.tgz(r-4.6-any)LDAcoop_0.1.2.tgz(r-4.5-any)
LDAcoop_0.1.2.tar.gz(r-4.7-any)LDAcoop_0.1.2.tar.gz(r-4.6-any)
LDAcoop_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
LDAcoop/json (API)

# Install 'LDAcoop' in R:
install.packages('LDAcoop', repos = c('https://zytohmgu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zytohmgu/ldacoop/issues

Datasets:
  • LDAdata - LDA (limiting dilution assay) data from a set of cell lines

On CRAN:

Conda:

3.70 score 3 scripts 199 downloads 9 exports 55 dependencies

Last updated from:40241733f6. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK231
source / vignettesOK208
linux-release-x86_64OK149
macos-release-arm64OK100
macos-oldrel-arm64OK132
windows-develOK127
windows-releaseOK105
windows-oldrelOK108
wasm-releaseOK125

Exports:LDA_activityLDA_activity_singleLDA_plotLDA_plot_activityLDA_plot_SFLDA_prepare_plotLDA_survivalLDA_survival_singleLDA_table

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglifecyclemagrittrmemoisemimennetR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml

LDAcoop

Rendered fromLDAcoop.Rmdusingknitr::rmarkdownon May 07 2026.

Last update: 2024-03-04
Started: 2022-06-29

Readme and manuals

Help Manual

Help pageTopics
LDA_activityLDA_activity
LDA_activity_singleLDA_activity_single
LDA_plotLDA_plot
LDA_plot_activityLDA_plot_activity
LDA_plot_SFLDA_plot_SF
LDA_prepare_plotLDA_prepare_plot
LDA_survivalLDA_survival
LDA_survival_singleLDA_survival_single
LDA_tableLDA_table
LDA (limiting dilution assay) data from a set of cell linesLDAdata