Package: LDAcoop 0.1.2

Daniel Samaga

LDAcoop: Analysis of Data from Limiting Dilution Assay (LDA) with or without Cellular Cooperation

Cellular cooperation compromises the established method of calculating clonogenic activity from limiting dilution assay (LDA) data. This tool provides functions that enable robust analysis in presence or absence of cellular cooperation. The implemented method incorporates the same cooperativity module to model the non-linearity associated with cellular cooperation as known from the colony formation assay (Brix et al. (2021) <doi:10.1038/s41596-021-00615-0>: "Analysis of clonogenic growth in vitro." Nature protocols).

Authors:Daniel Samaga [cre, aut], Nikko Brix [aut], Benedek Danko [aut], Kirsten Lauber [aut], Horst Zitzelsberger [aut]

LDAcoop_0.1.2.tar.gz
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LDAcoop_0.1.2.tgz(r-4.4-any)LDAcoop_0.1.2.tgz(r-4.3-any)
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LDAcoop.pdf |LDAcoop.html✨
LDAcoop/json (API)

Peer review:

Bug tracker:https://github.com/zytohmgu/ldacoop/issues

On CRAN:

9 exports 1.53 score 65 dependencies 3 scripts 188 downloads

Last updated 2 months agofrom:40241733f6. Checks:OK: 7. Indexed: yes.

Exports:LDA_activityLDA_activity_singleLDA_plotLDA_plot_activityLDA_plot_SFLDA_prepare_plotLDA_survivalLDA_survival_singleLDA_table

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacedata.tabledigestevaluatefansifarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmennetpillarpkgconfigR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapisassscalesstringistringrtibbletinytexutf8vctrsviridisviridisLitewithrxfunyaml