Package: CFAcoop 1.0.0

CFAcoop: Colony Formation Assay: Taking into Account Cellular Cooperation

Cellular cooperation compromises the plating efficiency-based analysis of clonogenic survival data. This tool provides functions that enable a robust analysis of colony formation assay (CFA) data in presence or absence of cellular cooperation. The implemented method has been described in Brix et al. (2020). (Brix, N., Samaga, D., Hennel, R. et al. "The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation." Radiat Oncol 15, 248 (2020). <doi:10.1186/s13014-020-01697-y>) Power regression for parameter estimation, calculation of survival fractions, uncertainty analysis and plotting functions are provided.

Authors:Daniel Samaga [cre, aut], Nikko Brix [aut], Kirsten Lauber [aut], Horst Zitzelsberger [aut]

CFAcoop_1.0.0.tar.gz
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CFAcoop.pdf |CFAcoop.html✨
CFAcoop/json (API)

# Install 'CFAcoop' in R:
install.packages('CFAcoop', repos = c('https://zytohmgu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zytohmgu/cfacoop/issues

Datasets:
  • CFAdata - Colony Formation Assay data on cellular cooperation

On CRAN:

Conda:

3.00 score 3 scripts 275 downloads 5 exports 65 dependencies

Last updated 4 years agofrom:39bb6d0238. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 09 2025
R-4.5-winOKMar 09 2025
R-4.5-macOKMar 09 2025
R-4.5-linuxOKMar 09 2025
R-4.4-winOKMar 09 2025
R-4.4-macOKMar 09 2025
R-4.4-linuxOKMar 09 2025
R-4.3-winOKMar 09 2025
R-4.3-macOKMar 09 2025

Exports:analyze_survivalcalculate_sfexport_sfplot_sfpwr_reg

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacedata.tabledigestevaluatefansifarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmennetpillarpkgconfigR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapisassscalesstringistringrtibbletinytexutf8vctrsviridisviridisLitewithrxfunyaml

CFAcoop

Rendered fromCFAcoop.Rmdusingknitr::rmarkdownon Mar 09 2025.

Last update: 2021-06-11
Started: 2020-11-06