Package: CFAcoop 1.0.0
CFAcoop: Colony Formation Assay: Taking into Account Cellular Cooperation
Cellular cooperation compromises the plating efficiency-based analysis of clonogenic survival data. This tool provides functions that enable a robust analysis of colony formation assay (CFA) data in presence or absence of cellular cooperation. The implemented method has been described in Brix et al. (2020). (Brix, N., Samaga, D., Hennel, R. et al. "The clonogenic assay: robustness of plating efficiency-based analysis is strongly compromised by cellular cooperation." Radiat Oncol 15, 248 (2020). <doi:10.1186/s13014-020-01697-y>) Power regression for parameter estimation, calculation of survival fractions, uncertainty analysis and plotting functions are provided.
Authors:
CFAcoop_1.0.0.tar.gz
CFAcoop_1.0.0.zip(r-4.5)CFAcoop_1.0.0.zip(r-4.4)CFAcoop_1.0.0.zip(r-4.3)
CFAcoop_1.0.0.tgz(r-4.4-any)CFAcoop_1.0.0.tgz(r-4.3-any)
CFAcoop_1.0.0.tar.gz(r-4.5-noble)CFAcoop_1.0.0.tar.gz(r-4.4-noble)
CFAcoop_1.0.0.tgz(r-4.4-emscripten)CFAcoop_1.0.0.tgz(r-4.3-emscripten)
CFAcoop.pdf |CFAcoop.html✨
CFAcoop/json (API)
| # Install 'CFAcoop' in R: |
| install.packages('CFAcoop', repos = c('https://zytohmgu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zytohmgu/cfacoop/issues
- CFAdata - Colony Formation Assay data on cellular cooperation
Last updated 3 years agofrom:39bb6d0238. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 09 2024 |
| R-4.5-win | OK | Nov 09 2024 |
| R-4.5-linux | OK | Nov 09 2024 |
| R-4.4-win | OK | Nov 09 2024 |
| R-4.4-mac | OK | Nov 09 2024 |
| R-4.3-win | OK | Nov 09 2024 |
| R-4.3-mac | OK | Nov 09 2024 |
Exports:analyze_survivalcalculate_sfexport_sfplot_sfpwr_reg
Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacedata.tabledigestevaluatefansifarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmennetpillarpkgconfigR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapisassscalesstringistringrtibbletinytexutf8vctrsviridisviridisLitewithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| analyze_survival | analyze_survival |
| calculate_sf | calculate_sf |
| Colony Formation Assay data on cellular cooperation | CFAdata |
| export_sf | export_sf |
| plot_sf | plot_sf |
| pwr_reg | pwr_reg |
